Conda

How to create a personalized environment for conda

Activating conda

source /beegfs/data/soft/bioconda/etc/profile.d/conda.sh

Setting up conda

Create a .condarc file in your home with :

channels:
    - bioconda
    - defaults
envs_dirs:
    - /beegfs/data/yourhome/conda_envs
pkgs_dirs:
    - /beegfs/data/yourhome/conda_pkgs

Creating an environment and install some tools

conda create monenvamoi
conda activate monenvamoi
conda install -c bioconda python=3.9
conda install -c bioconda pandas
conda install -c bioconda numpy

Your conda environments will now be created in your data/ and you can find these directories in it:

conda_envs
conda_pkgs
monenvamoi

It's much simpler than using the -p option /beegfs/data/delmotte/myconda